Novel insights into the marine phase and river fidelity of anadromous twaite shad Alosa fallax in the UK and Ireland

© 2020 The Authors. Aquatic Conservation: Marine and Freshwater Ecosystems published by John Wiley & Sons Ltd Most research on anadromous fishes has been invested in their freshwater life-phases, resulting in a relatively sparse understanding of their spatial ecology during marine life-phases. However, understanding the marine dispersal of anadromous fishes is essential to identify threats and to implement conservation measures that fully encompass their lifecycle. The twaite shad Alosa fallax is an anadromous fish increasingly imperilled across its range due to pollution, harvesting, and impediments to freshwater migration, but little is known about its distribution and movements during its marine life-phase. Here, the application of acoustic telemetry provided novel insights into the coastal dispersal of twaite shad in the UK and Ireland during 2018–2019, and the freshwater entry of individuals during the 2019 spawning season. Of 73 twaite shad acoustic-tagged during their upstream migration in the River Severn in May 2018, 58 emigrated from the river. Twelve were subsequently detected 200 km to the south-west at the Taw–Torridge Estuary between July 2018 and April 2019, where estuarine movements up to 5.8 km inland occurred in summer, winter, and spring. One was subsequently detected in the Munster Blackwater Estuary (Ireland) and then in the River Severn, indicating a minimum movement distance of 950 km. Thirty-four (59%) of the emigrating individuals from 2018 re-entered fresh water in the rivers Severn (n = 33) and Wye (n = 2) in April and May 2019. These results suggest year-round use of estuarine and nearshore habitats by at least a subset of the twaite shad population during their marine phase, providing evidence of potential range overlap between populations that spawn in different areas in the UK and Ireland, which may be facilitated by substantial dispersal. The results also highlight the potential of telemetry for estimating freshwater and marine mortality, and the benefits of sharing detection data across networks

A novel method for identifying coded tags recorded on aquatic acoustic monitoring systems.

Aquatic biotelemetry increasingly relies on using acoustic transmitters ('tags') that enable passive detection of tagged animals using fixed or mobile receivers. Both tracking methods are resource-limited, restricting the spatial area in which movements of highly mobile animals can be measured using proprietary detection systems. Transmissions from tags are recorded by underwater noise monitoring systems designed for other purposes, such as cetacean monitoring devices, which have been widely deployed in the marine environment; however, no tools currently exist to decode these detections, and thus valuable additional information on animal movements may be missed. Here, we describe simple hybrid methods, with potentially wide application, for obtaining information from otherwise unused data sources. The methods were developed using data from moored, acoustic cetacean detectors (C-PODs) and towed passive receiver arrays, often deployed to monitor the vocalisations of cetaceans, but any similarly formatted data source could be used. The method was applied to decode tag detections that were found to have come from two highly mobile fish species, bass (Dicentrarchus labrax) and Twaite shad (Alosa fallax), that had been tagged in other studies. Decoding results were validated using test tags; range testing data were used to demonstrate the relative efficiency of these receiver methods in detecting tags. This approach broadens the range of equipment from which acoustic tag detections can be decoded. Novel detections derived from the method could add significant value to past and present tracking studies at little additional cost, by providing new insights into the movement of mobile animals at sea

Tracking anadromous fish over successive freshwater migrations reveals the influence of tagging effect, previous success and abiotic factors on upstream passage over barriers

Predicting and mitigating the impact of anthropogenic barriers on migratory fish requires an understanding of the individual and environmental factors that influence barrier passage. Here, the upstream spawning migrations of iteroparous twaite shad Alosa fallax were investigated over three successive spawning migrations in a highly fragmented river basin using passive acoustic telemetry (n=184). More fish approached and passed barriers in the lower river reaches than further upstream, with the median cumulative weir passage time (IQR) of 4.6 (1.8 - 9.2) days representing 18% of their time in river. Returning fish in their second year had significantly higher weir passage rates than in their tagging year, with passage rates also positively influenced by previous passage success. Higher water temperature and river level also had positive impacts on passage rates. Lower weir passage rates by newly tagged individuals suggests that reliance on within-year passage estimates in telemetry-based barrier impact assessments could result in conservative results, while higher passage rates of previously successful versus unsuccessful individuals suggests a conserved motivation and/or inherent ability to pass barriers

Individual repeatability in the timing of river entry indicates the strong influence of photoperiod in the spawning migrations of iteroparous twaite shad Alosa fallax

The timing of entry into freshwater by mature anadromous fishes is an important component of their migration phenology. In iteroparous anadromous species, identifying the migration cues that influence the timing of entry into freshwater, and annual variability in these timings, is important in assessing the extent of individual repeatability. Here, passive acoustic telemetry tracked 71 twaite shad Alosa fallax (‘shad’) returning to the River Severn’s upper estuary over successive spawning seasons, providing individual information on river entry timing and the associated migration cues. The timing of shad returning to the river (defined as their first detection on an acoustic receiver in the upper estuary) was consistent between years and strongly predicted by photoperiod (as increasing day length), whereas water temperatures and flow rates were weak predictors and highly variable between years. Timings of river entry of individual shad were also consistent across consecutive spawning migrations, indicating high individual repeatability. The application of acoustic telemetry in this study thus revealed high repeatability in the timing of annual spawning migrations, which were cued mainly by increasing day length and that, being seasonally predictable, should ensure entry into freshwater with sufficient time to arrive in spawning areas when in-river environmental conditions are favourable

Microstructural modifications in α-brass targets after small charge explosions

Metals exposed to explosions undergo several macro and micro changes. At the microstructural level slip bands or mechanical twins, caused by the pressure and temperature wave, can be detected. Twinning or slip occurs depending on the metal stacking fault energy, the blast wave pressure and the deformation rate. An experimental campaign was performed on different FCC metals. Results concerning α-brass (30% Zn) are presented herein. Specimens exposed to small charge explosion (100 g of plastic explosive) were analyzed by optical and electronic microscopy, by Electron Back-Scattered Diffraction (EBSD) imaging, and by X-ray diffraction. Microstructural plastic deformation marks were detected and their possible attribution, either to mechanical twinning or to cross slip, is discussed on the basis of X-ray diffraction and EBSD results. The detectability target-to-charge distance limit, and hence the critical stress for microstructural changes, are evaluated

The FAIR Guiding Principles for scientific data management and stewardship

There is an urgent need to improve the infrastructure supporting the reuse of scholarly data. A diverse set of stakeholders—representing academia, industry, funding agencies, and scholarly publishers—have come together to design and jointly endorse a concise and measureable set of principles that we refer to as the FAIR Data Principles. The intent is that these may act as a guideline for those wishing to enhance the reusability of their data holdings. Distinct from peer initiatives that focus on the human scholar, the FAIR Principles put specific emphasis on enhancing the ability of machines to automatically find and use the data, in addition to supporting its reuse by individuals. This Comment is the first formal publication of the FAIR Principles, and includes the rationale behind them, and some exemplar implementations in the community

Genetic dissection of fruit quality traits in the octoploid cultivated strawberry highlights the role of homoeo-QTL in their control

Fruit quality traits are major breeding targets in the Rosaceae. Several of the major Rosaceae species are current or ancient polyploids. To dissect the inheritance of fruit quality traits in polyploid fleshy fruit species, we used a cultivated strawberry segregating population comprising a 213 full-sibling F1 progeny from a cross between the variety ‘Capitola’ and the genotype ‘CF1116’. We previously developed the most comprehensive strawberry linkage map, which displays seven homoeology groups (HG), including each four homoeology linkage groups (Genetics 179:2045–2060, 2008). The map was used to identify quantitative trait loci (QTL) for 19 fruit traits related to fruit development, texture, colour, anthocyanin, sugar and organic acid contents. Analyses were carried out over two or three successive years on field-grown plants. QTL were detected for all the analysed traits. Because strawberry is an octopolyploid species, QTL controlling a given trait and located at orthologous positions on different homoeologous linkage groups within one HG are considered as homoeo-QTL. We found that, for various traits, about one-fourth of QTL were putative homoeo-QTL and were localised on two linkage groups. Several homoeo-QTL could be detected the same year, suggesting that several copies of the gene underlying the QTL are functional. The detection of some other homoeo-QTL was year-dependent. Therefore, changes in allelic expression could take place in response to environmental changes. We believe that, in strawberry as in other polyploid fruit species, the mechanisms unravelled in the present study may play a crucial role in the variations of fruit quality